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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813067.1_cds_XP_016497400.1_11527
CDS Infomation

[gene=LOC107816214] [db_xref=GeneID:107816214] [protein=ATP-dependent zinc metalloprotease FTSH, chloroplastic-like] [protein_id=XP_016497400.1] [location=complement(join(99694..99915,100004..100175,100408..100591,100666..100912,101501..102799))] [gbkey=CDS]
Sequence

ATGGCCAATTCTCTCCTCTCTTCCAACTTCATGGGTTCTCAAATCTTTGTCTCTCCTCCC
ACCCCTAAAACAACAAAGTATTTCCATTTTCACTCCAAAAGAAAGTCTTTAATCCCTCAA
TCAATTCTCAACAAAAAACCCAATTCAGATAATTCAAAGAATATTCCTTCAAAAGCTGCT
TTAGCTGCTTTACTCTTTTCTTCAATCACTCCACATGCCTATGCTCTTGATAATACTACC
CCTACAGTACCAACCCCTCAAGTGATTCAAGCTGAAGCAGCCAATCCCACCACTTCAAAT
CCATTCTCTCAAAATATAATCTTGAATGCTCCAAAGCCTCAAGCACAGACCAATCCTGAA
CTTCCAGAAGTTTCTCAATGGAGATACAGTGAGTTCTTGAATGCTGTAAAGAAGGGTAAA
GTTGAAAGAGTCAGATTCAGTAAAGACGGAACTACCCTTCAGCTTAATGCTGTTGATGGC
CGTAGAGCTAGTGTAATTGTGCCTAATGACCCGGATTTAATTGACATTTTGGCTATGAAT
GGTGTTGATATATCAGTTTCTGAAGGTGATTCTGGTGGTAATGGGTTGTTTAATTTAATT
GGAAGTTTATTCCCTTTTATTGCTTTTGCTGGATTGTTCTATCTTTTCCAGAGATCTCAA
GGTGGGCCTGGTGGGCCTGGTGGGCTTGGTGGGCCCATGGATTTTGGTAGATCAAAGTCC
AAGTTTCAAGAAGTTCCTGAAACTGGAGTGTCTTTTGCTGATGTTGCTGGTGCTGATCAA
GCTAAATTGGAGTTACAAGAAGTAGTTGATTTTTTAAAGAATCCTGATAAGTATACAGCT
TTAGGTGCTAAAATACCAAAAGGGTGTCTTTTGGTGGGACCACCTGGTACAGGAAAGACA
CTTTTGGCTAGAGCAGTTGCTGGTGAAGCTGGTGTACCATTTTTCTCATGTGCACCATCA
GAGTTTGTTGAGTTGTTTGTTGGTGTTGGAGCTTCTAGAGTGAGGGATTTGTTCGAGAAG
GCGAAGTCGAAAGCGCCTTGCATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAG
AGAGGTGCAGGAATGGGAGGTGGGAATGATGAGAGAGAGCAGACTATTAATCAACTCTTG
ACTGAAATGGATGGTTTTTCTGGAAATAGTGGAGTAATTGTTTTGGCTGCAACCAATAGG
CCTGATGTTCTTGATTCTGCATTGTTGAGACCTGGGAGGTTCGATCGACAAGTGACTGTC
GACAGGCCTGATGTTGCTGGTAGAATCAAGATTCTTCAGGTGCATTCTAGAGGAAAGGCC
CTTGCAAAGGATGTGGACTTTGAGAAGATTGCCAGGAGAACACCGGGTTTCACTGGTGCA
GATTTGCAAAACTTGATGAATGAAGCAGCGATCCTTGCAGCTAGGCGTGAACTAAAGGAA
ATAAGTAAAGATGAGATATCTGATGCTTTGGAGAGGATAATTGCTGGACCGGAGAAGAAA
AATGCTGTTGTCTCAGAGGAGAAGAAGAAGCTGGTAGCTTATCATGAGGCCGGCCATGCC
TTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATTATTCCTCGG
GGCCAAGCTGGTGGTCTTACCTTCTTTGCCCCTAGCGAAGAAAGACTTGAGTCGGGCTTG
TACAGCAGGAGCTACCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGGTTGCTGAG
GAGGTTATTTTTGGACAAGACAACGTAACAACTGGGGCATCTAACGATTTCATGCAAGTT
TCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGGTTCAGCAAAAAGATCGGACAGGTT
GCCATTGGAGGAGGTGGAGGAAATCCTTTCCTAGGTCAACAGATGTCAACCCAGAAAGAC
TACTCCATGGCAACAGCCGATGTGGTTGATGCTGAAGTAAGGGAATTGGTTGAAAGAGCA
TATGAAAGGGCAACACAGATTATCACAACACACATTGACATCCTACACAAGCTTGCTCAG
CTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATCGATGGC
AAGGCCGAGCTATACATTTCATGA

Peptide Sequence

PEP ID

XP_016497400.1
PEP Infomation

PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic-like [Nicotiana tabacum]
Sequence

MANSLLSSNFMGSQIFVSPPTPKTTKYFHFHSKRKSLIPQSILNKKPNSDNSKNIPSKAA
LAALLFSSITPHAYALDNTTPTVPTPQVIQAEAANPTTSNPFSQNIILNAPKPQAQTNPE
LPEVSQWRYSEFLNAVKKGKVERVRFSKDGTTLQLNAVDGRRASVIVPNDPDLIDILAMN
GVDISVSEGDSGGNGLFNLIGSLFPFIAFAGLFYLFQRSQGGPGGPGGLGGPMDFGRSKS
KFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKT
LLARAVAGEAGVPFFSCAPSEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ
RGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV
DRPDVAGRIKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRELKE
ISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR
GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQV
SRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERA
YERATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIS

Transcript Sequence

Gene sequence data has not been registered.